PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G0319
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 243aa    MW: 27743.9 Da    PI: 5.4125
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G0319genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.95.5e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l + +   G ++W+t+++  g+ R++k+c++rw +yl
      Gh_D09G0319 14 RGPWTIEEDHKLMNFILNNGIHCWRTVPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP

2Myb_DNA-binding56.27.9e-1867109145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg++T+ E++++++++++lG++ W++Ia++++ gRt++++k++w 
      Gh_D09G0319  67 RGAFTESEEDQIIQLHARLGNR-WSKIASHFP-GRTDNEIKNHWS 109
                      89********************.*********.***********5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-21564IPR009057Homeodomain-like
PROSITE profilePS5129413.486961IPR017930Myb domain
SuperFamilySSF466896.39E-2911108IPR009057Homeodomain-like
SMARTSM007172.4E-61363IPR001005SANT/Myb domain
PfamPF002496.3E-121461IPR001005SANT/Myb domain
CDDcd001679.42E-51661No hitNo description
PROSITE profilePS5129427.13562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-2665117IPR009057Homeodomain-like
SMARTSM007171.3E-1666114IPR001005SANT/Myb domain
PfamPF002491.6E-1667109IPR001005SANT/Myb domain
CDDcd001671.54E-1169108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIHCWRTV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGAF TESEEDQIIQ LHARLGNRWS KIASHFPGRT DNEIKNHWST RIKKKLKLLG  120
LDPVTHKPIE KVEKNDGDSS NKSNGDDQQQ GIKLDDDEKV EGIELSLDET NDLFNSYQML  180
CESFDLDSWL NQDAANNTCS SSYSMEESSN KSSTGETNST IGEDSLKQWV DSVDSFLSWD  240
SFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27121165108B-MYB
1gv2_A2e-27121162105MYB PROTO-ONCOGENE PROTEIN
1h88_C6e-271211656159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-271211656159MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-27121162105C-Myb DNA-Binding Domain
1msf_C2e-27121162105C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483906.11e-179PREDICTED: myb-related protein 315-like
SwissprotP813942e-83MYB15_ANTMA; Myb-related protein 315
TrEMBLA0A0D2RVD11e-179A0A0D2RVD1_G
STRINGPOPTR_0001s36220.11e-114(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.12e-84myb domain protein 40